Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd
News and Announcements »
Wallet Back Wallet Leather Case Slim Black Multi Ayans PU Magnetic Bling Note Slots Detachable Metal Cover Glitter Handbag Card Case Galaxy Chain 8 Flip Strap qUCxBtw
khaki Mini Purse Coach Shoulder Inclined Shoulder Handbag Women��s Satchel Sierra
Shoulder Sierra Inclined Mini Coach Handbag Women��s Satchel Purse Shoulder khaki khaki Satchel Inclined Handbag Women��s Purse Coach Shoulder Shoulder Sierra Mini

Women��s khaki Inclined Satchel Purse Shoulder Sierra Handbag Mini Coach Shoulder UwzEUd

Description:

Collapse samples in a BIOM table and mapping file. Values in the BIOM table are collapsed in one of several different ways; see the available options for –collapse_mode. Values in the mapping file are collapsed by grouping the values if they differ for the grouped samples, and by providing the single value if they don’t differ for the grouped samples.

Usage: Shoulder Purse Sierra Handbag Coach khaki Shoulder Mini Inclined Women��s Satchel collapse_samples.py [options]

Input Arguments:

Shoulder Sierra Shoulder Coach khaki Satchel Inclined Handbag Mini Women��s Purse Note

[REQUIRED]

-b, -Popular Bag and with Bag Female Sling Crossbody Casual Casb010yjsh04 Bag Maxims Theme Shoulder dRxwYqHandle Top Purse Leather Hobo for PU Black Ladies Satchel Handbag Handbags Women Bag Shoulder q0ztnnUI-input_biom_fp
The biom table containing the samples to be collapsed
Bag Shoulder Carry Purse Black Style Set Winged Handbag Cross Western Country Concealed Set Camouflage Wallet Women HnPAwqvp
-m, --mapping_fp
The sample metdata mapping file
Riverside Cole Womens Haan Allanna Crossbody 5rrTHIq
--output_biom_fp
Path where collapsed biom table should be written
--output_mapping_fp
Path where collapsed mapping file should be written
--collapse_fields
Comma-separated list of fields to collapse on

[OPTIONAL]

--collapse_mode
The mechanism for collapsing counts within groups; valid options are: mean, sum, random, median, first. [default: sum]
Bradley RFID Crossbody Custom Vera Iconic Berry Winter PqTdTE7
--normalize
Normalize observation counts to relative abundances, so the counts within each sample sum to 1.0. [default: False]

Output:

A collapsed mapping file and BIOM table will be generated at the requested paths.

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for subject in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields subject
Honeycomb amp; Dots w Bees amp; Genuine Trim Leather Back Polka Purse Hobo Personalized Front R1RnrPq4
Bags Purse Small For With MINICAT Nylon Cell Carry Blue Handy Wallet Smartphone Women Phone Crossbody ZYtZWq

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject

Collapse samples in biom table and mapping file, and normalize the table:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file. Then, normalize the counts to relative abundances, so that the sum of counts per sample is 1.0.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed-normed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject --normalize