Double for Bag Bag Zipper Wallet Multicolor Women Color Handbag Sequins Women Cluthes Lavany 1CqwSS Double for Bag Bag Zipper Wallet Multicolor Women Color Handbag Sequins Women Cluthes Lavany 1CqwSS Double for Bag Bag Zipper Wallet Multicolor Women Color Handbag Sequins Women Cluthes Lavany 1CqwSS Double for Bag Bag Zipper Wallet Multicolor Women Color Handbag Sequins Women Cluthes Lavany 1CqwSS Double for Bag Bag Zipper Wallet Multicolor Women Color Handbag Sequins Women Cluthes Lavany 1CqwSS
News and Announcements »
Purses Medium Lightweight Silver Handbags Black Tassel with Cute Bags DASEIN Crossbody 7660 g7qpwYY
Women Cluthes Multicolor Sequins Bag Handbag Wallet Color Double Bag Lavany Zipper Women for
Bag Double for Zipper Sequins Multicolor Wallet Handbag Color Cluthes Women Lavany Bag Women Women Bag Handbag Sequins for Color Zipper Cluthes Double Lavany Multicolor Bag Women Wallet

Double for Bag Bag Zipper Wallet Multicolor Women Color Handbag Sequins Women Cluthes Lavany 1CqwSS

Description:

Collapse samples in a BIOM table and mapping file. Values in the BIOM table are collapsed in one of several different ways; see the available options for –collapse_mode. Values in the mapping file are collapsed by grouping the values if they differ for the grouped samples, and by providing the single value if they don’t differ for the grouped samples.

Usage: Sequins Multicolor Bag Handbag Wallet for Color Women Zipper Women Cluthes Lavany Double Bag collapse_samples.py [options]

Input Arguments:

Color Sequins Cluthes Zipper Handbag Double Lavany Women Women for Bag Wallet Bag Multicolor Note

[REQUIRED]

-b, -Tote bag Top Hobo Gray Shoulder handle Leather Women Designer Purse Bags EqIO7fwPocket Shoulder Purse Bag Multi Lightweight Crossbody Messenger Blue Handbag Nylon nIHBgFqd-input_biom_fp
The biom table containing the samples to be collapsed
3049 Fellini Black 41 Carlo Evening Bag Yggrite qXw1dT6d
-m, --mapping_fp
The sample metdata mapping file
Shoulder Waist Women's Bags Raylans Bags Crossbody Multifunction Mermaid White Sequins 0Pqqw4t
--output_biom_fp
Path where collapsed biom table should be written
--output_mapping_fp
Path where collapsed mapping file should be written
--collapse_fields
Comma-separated list of fields to collapse on

[OPTIONAL]

--collapse_mode
The mechanism for collapsing counts within groups; valid options are: mean, sum, random, median, first. [default: sum]
Tassel Handbag Bag with Shoulder Black Tote Womens Hobo Crossbody Leather SEALINF wIqazUxPn
--normalize
Normalize observation counts to relative abundances, so the counts within each sample sum to 1.0. [default: False]

Output:

A collapsed mapping file and BIOM table will be generated at the requested paths.

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for subject in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields subject
Clutch Box MILLY Diamond Metallic Multi twPq06qp
Cross Bag In Leather Coach Body Ruby OXBLOOD SILVER Reversible nRq1Hf6Y

Collapse samples in biom table and mapping file:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject

Collapse samples in biom table and mapping file, and normalize the table:

Collapse samples by taking the median value for each observation in each group, where group is defined by having the same values for both subject and replicate-group in the mapping file. Then, normalize the counts to relative abundances, so that the sum of counts per sample is 1.0.

collapse_samples.py -b table.biom -m map.txt --output_biom_fp collapsed-normed.biom --output_mapping_fp collapsed_map.txt --collapse_mode median --collapse_fields replicate-group,subject --normalize